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Sort articles by: 📖 Volume | 📅 Date | ⭐ Most Rates | 👁️ Most Views | 🚀 Rising Stars | 📊 Citations (Scopus) | 🔥 Hot Papers
1.

Synthesis, biological activity and molecular docking of 2-(2H-chromen-3-yl)-[1,3,4]oxadiazole derivatives Pages 347-354 Right click to download the paper Download PDF

Authors: Oksana Khropot, Viktoriia Matiichuk, Iryna Drapak, Yuliia Matiichuk, Vasyl Matiychuk

doi 10.5267/j.ccl.2026.1.003 Crossmark

🔑 Keywords: 2-(2H-chromen-3-yl)-[1, 3, 4]oxadiazole, Anticancer activity, Antimicrobial activity, DNA gyrase, Docking

Abstract:
Some new 2-(2H-chromen-3-yl)-[1,3,4]oxadiazole derivatives 8a-e using Huisgen synthesis of 1,3,4-oxadiazoles reaction. Their structures were verified by 1H NMR and and elemental analyses. Compounds 8a-e were tested against 60 human cancer cell lines for in vitro cytotoxic activities according to the international scientific programme of the US National Institute of Health – DTP (Developmental Therapeutics Program), National Cancer Institute (Bethesda, Maryland, USA). Compounds with moderate activity against certain cancer cell lines were identified. In addition, in collaboration with CO-ADD (The Community for Open Antimicrobial Drug Discovery), we have studied the antibacterial activity against the ESCAPE group of strains and the antifungal activity against C. Albicans ATCC 90028 and C. Neoformans ATCC 208821. The studies allowed us to identify 3-[5-(6-bromo-2H-chromen-3-yl)-[1,3,4]oxadiazol-2-yl]-pyridine as a compound with high antibacterial activity against E. Coli ATCC 25922 with MIC 8 μg/ml. Docking studies have shown high affinity of this compound for the bacterial DNA gyrase of Escherichia coli.
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Journal: CCL | Year: 2026 | Volume: 15 | Issue: 2 | Views: 179

 
2.

Synthesis, characterization and in silico evaluation of 2,5-bis(2-(trifluoromethyl)-1H-benzimidazol-5-yl)-1,3,4-oxadiazole: Reactivity, ADME/toxicity, and docking against therapeutic targets Pages 793-804 Right click to download the paper Download PDF

Authors: Assiya Atif, Soukaina Ameur, Houssine Ait Sir

doi 10.5267/j.ccl.2025.8.004 Crossmark

🔑 Keywords: Synthesis, Characterization, 1, 3, 4-oxadiazole, Reactivity, Docking

Abstract:
This study presents the synthesis and characterization of a novel 1,3,4-oxadiazole derivative compound, 2,5-bis(2-(trifluoromethyl)-1H-benzimidazol-5-yl)-1,3,4-oxadiazole, using 1H NMR, 13C NMR, mass spectrometry and FTIR-ATR infrared spectroscopy. Reactivity, ADME/toxicity and docking to therapeutic targets were investigated revealed that 2,5-bis(2-(trifluoromethyl)-1H-benzimidazol-5-yl)-1,3,4-oxadiazole (BTBO) exhibits excellent intestinal absorption, limited solubility and CNS penetration, and restained clearance. It interacts with key cytochromes and transporters, suggesting possible drug–drug interactions. Toxicity evaluations indicated mutagenic potential and moderate oral toxicity, with no hepatotoxicity or skin sensitization. Molecular docking demonstrated strong binding affinities to targets in six therapeutic areas, often outshining reference ligands, supporting its auspicious pharmacokinetic and therapeutic potential.
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Journal: CCL | Year: 2025 | Volume: 14 | Issue: 4 | Views: 295

 
3.

The use of combined machine learning and in-silico molecular approaches for the study and the prediction of anti-HIV activity Pages 205-232 Right click to download the paper Download PDF

Authors: Mohamed Ouabane, Zouhir Dichane, Marwa Alaqarbeh, Radwan Alnajjar, Chakib Sekkate, Tahar Lakhlifi, Mohammed Bouachrine

doi 10.5267/j.ccl.2024.6.004 Crossmark

🔑 Keywords: Anti-HIV, Machine Learning, QSAR, Docking, MD simulation

Abstract:
While the number of AIDS-related deaths continues to rise, efforts have been made to transform the disease into a manageable chronic condition. HIV protease inhibitors have become central to combination therapy. As a result, these inhibitors have become a major focus of anti-HIV drug development. This research takes a data-driven approach to drug development through the use of quantitative structure-activity relationship (QSAR) analysis. A dataset of 450 anti-HIV drugs was used to construct and validate models. Using extensive validation methods and various machine learning algorithms, the results clearly showed that the "ET" regression outperformed the other models (“XGB”, “LGBM”, “DT”, “RF”, “GB”, “Bag”, and “HGB”) in terms of goodness of fit, predictivity, generalizability, and model robustness. Promising compounds were subjected to molecular docking and molecular dynamics simulation, resulting in drugs with favourable pharmacokinetic and pharmacodynamic properties that consistently interact with the therapeutic target.
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Journal: CCL | Year: 2025 | Volume: 14 | Issue: 1 | Views: 485

 
4.

Synthesis, antimicrobial activity, DFT-calculation, and docking of 4-(1,3,4-thiadiazol-2-yl)-containing polysubstituted pyrroles Pages 761-776 Right click to download the paper Download PDF

Authors: Sergiy Kemskyi, Alina Grozav, Vitalii Chornous, Nina Yakovychuk, Mariana Fedoriv, Dmytro Melnyk, Oksana Melnyk, Mykhailo Vovk

doi 10.5267/j.ccl.2024.3.005 Crossmark

🔑 Keywords: 5-Chloro-4-formyl-1H-pyrrole-3-carboxylates, 4-(1, 3, 4-Thiadiazol-2-yl)pyrroles, Antimicrobial activity, DFT calculation, Docking

Abstract:
A series of new 4-(1,3,4-thiadiazol-2-yl)-containing polysubstituted pyrroles 3 a-k has been synthesized by a preparative convenient method from ethyl 5-chloro-4-formyl-1H-pyrrole-3-carboxylates 1 a-e, which were selectively transformed into the corresponding polysubstituted pyrrole-4-carboxylic acids 2 а-е using sodium hypochlorite as an oxidizer. Further, they were transformed into the target compounds with a high yield using the cyclocondensation with N-mono- or N,N-disubstituted thiosemicarbazides in the boiling phosphorus trichloroxide. As seen from the screening of antimicrobial activity, the synthesized compounds exhibit the inhibiting and bactericide activity against some bacteria and fungi. The highest activity has been established for the compounds 3 a, c, e-h, j against the strain Klebsiella pneumoniae (МІС=31.25 µg/mL). The calculated HOMO energy level proves that the compound 3 с is the most reactive ligand for the interaction with a protein receptor. The molecular docking data show that the compound 3 h has the highest affinity to the ThiM Klebsiella pneumoniae kinase.
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Journal: CCL | Year: 2024 | Volume: 13 | Issue: 4 | Views: 916

 
5.

In silico investigations on the repurposing of antivirals for Covid-19 and pharmacophore modelling Pages 199-206 Right click to download the paper Download PDF

Authors: Vinod P Raphael, K.S. Shaju, T.K. Bindu, A. Sini

doi 10.5267/j.ccl.2023.7.001 Crossmark

🔑 Keywords: Remdesivir, Docking, Pharmacophore, Binding Energy, ADME

Abstract:
The pandemic COVID-19 has been spreading around the globe from December 2019 onwards and is considered the most infectious disease of this century. To date, there is no effective drug against SARS-CoV-2 discovered by pharmaceutical scientists, and the research is going rigorously all over the world. In this work, we examined the interaction of the already existing antivirals (Lopinavir, Atazanavir, and Remdesivir) with the structural proteins of SARS-CoV-2 using computational methods. Pharmacophore modeling of these drugs was conducted using molecular databases to determine the lead compounds from molecular databases. Pharmagist Webserver and Zinc Molecular Database were used to find out the pharmacophore and lead compounds, respectively. The drug-likeness properties of the compounds were evaluated by the SwissADME webserver. In silico studies showed that the binding affinities of the drugs followed the order Remdesivir > Atazanavir > Lopinavir. Docking and pharmacological studies revealed the potency and drug-likeness of the synthetic molecules.
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Journal: CCL | Year: 2024 | Volume: 13 | Issue: 1 | Views: 732

 

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