Open Access Article | |
1. |
Antifungal potential of mannopyranoside derivatives through computational and molecular docking studies against Candida albicans 1IYL and 1AI9 proteins
, Pages: 1-14 Shahin Sultana, Md Ahad Hossain, Md Mazherul Islam and Sarkar M. A. Kawsar PDF (2300 K) |
Abstract: Methyl α-D-mannopyranoside (MAM) is a naturally occurring carbohydrate derivative that has gained attention in drug discovery due to its potential therapeutic applications, particularly as an antifungal agent. In this study, we employed a computational approach to investigate the interactions between MAM and two Candida albicans antifungal proteins, 1IYL and 1AI9, through molecular docking simulations. Furthermore, we performed a PASS (Prediction of Activity Spectra for Substances) analysis to predict MAM potential biological activities, explored the pharmacokinetic properties and ADMET (absorption, distribution, metabolism, excretion, and toxicity) profiles, and optimized the MAM using the density functional theory (DFT) method. The molecular docking results revealed favorable binding interactions between MAM and the active sites of the 1IYL and 1AI9 proteins, suggesting potential antifungal activity. Additionally, the ADMET profiles indicated low toxicity and suitable drug-like properties, such as moderate metabolic stability and minimal risk of adverse effects. Furthermore, DFT optimization was performed to investigate the molecular geometry and electronic properties of MAM. The optimization results provided valuable information on the stability and reactivity of MAM, enabling a better understanding of its chemical behavior and potential modifications for enhanced activity. Finally, PASS prediction was employed to evaluate MAM's potential biological activities beyond its antifungal properties. The analysis revealed several potential activities, including antibacterial, antiviral, and immunomodulatory effects, expanding the scope for future research and therapeutic applications. In conclusion, this computational study sheds light on the molecular interactions, pharmacokinetic properties, ADMET profiles, DFT optimization, and PASSES predictions of MAM. These findings highlight the potential of MAM as a promising antifungal agent with favorable pharmacological properties. DOI: 10.5267/j.ccl.2023.9.004 Keywords: DFT, ADMET, Molecular docking, Pharmacokinetics, Antimicrobial, PASS | |
Open Access Article | |
2. |
Nitro-functionalized analogues of 1,3-Butadiene: An overview of characteristic, synthesis, chemical transformations and biological activity
, Pages: 15-30 Mikołaj Sadowski and Karolina Kula PDF (2300 K) |
Abstract: The nitrovinyl moiety is surely one of the most reactive fragments in organic chemistry, continuously employed to explore original pathways and reach new targets. One of the most important classes of chemicals containing this fragment are nitro-functionalised analogues of 1,3-butadiene. In this paper a comprehensive review study of these compounds is performed. The manuscript includes an analysis of physicochemical properties, spectral characteristic, synthesis, biological activity, and possible transformations of nitro substituted analogues of 1,3-butadiene. The analysis was divided into several parts, depending on the number of nitro groups included in the structure of a 1,3-butadiene analogue. In addition, the work includes information about hazards and safety principles when working with nitro compounds. Based on the analysis of the literature, it can be concluded that nitro-functionalised analogues of 1,3-butadiene exhibit diversified profile of properties, and an outstanding potential as valuable reagents in organic synthesis useful to obtain heterocycles that can be applied in medicine. DOI: 10.5267/j.ccl.2023.9.003 Keywords: Nitrobutadiene, Synthesis, Spectral Characteristics, Chemical Transformation, Biological Activity | |
Open Access Article | |
3. |
Nanoparticle synthesis advancements and their application in wastewater treatment: A comprehensive review
, Pages: 31-40 Shubhangini Kumari, Vandna Singh and Deepali Singh PDF (2300 K) |
Abstract: The global water crisis requires effective wastewater treatment methods where conventional approaches often face challenges related to cost, recyclability, efficiency, and overall effectiveness. In this regard, the significantly small size, large surface area, and enhanced photocatalytic properties of recently developed nanoparticles have opened new avenues for wastewater treatment. This comprehensive review focuses on recent advancements in the synthesis methods for different types of nanoparticles and nanocomposites based on metals, carbon, polymers, waste materials, and zeolites which have highly sustainable and innovative results in wastewater treatment. The introduction of silver and gold nanoparticles has enhanced photocatalytic and biological activities. Similarly, zeolite and seaweed composites have exhibited efficient dye degradation capabilities. Eco-friendly carbon soot nanoparticles have shown promising biological activities, while nitrogen-doped carbon quantum dots have exhibited long-term stability for various applications. Additionally, waste material-based calcium oxide nanoparticles and carbon quantum dot-carbon nanotube nanocomposites have also shown enhanced dye degradation activities. DOI: 10.5267/j.ccl.2023.9.002 Keywords: Algae, Carbon dots, Dyes, Zeolite, Wastewater treatment | |
Open Access Article | |
4. |
Synthesis and characterisation of novel metal-organic frameworks (MOFs) based on zirconium and bicinchoninic acid
, Pages: 41-48 Noor Albayati, Waseem Yousif M. AL-dulaimy, Muhsin J Jweeg, Mohammed Kadhom, Suhaib Salih and Ghassan Abdullah PDF (2300 K) |
Abstract: Metal-organic frameworks (MOFs) are a relatively new class of materials of unique porous structures and exceptional properties. Currently, more than 110,000 types of MOFs have been reported among the countless possibilities. In this study, we have synthesised a novel MOF using zirconium chloride as the metal source and 4,4'-dicarboxy-2,2'-biquinoline (bicinchoninic acid disodium salt) as the linker, which reacted in N,N-Dimethylformamide (DMF) solvent. Three preparation methods were employed to prepare five types of the MOF, and they were compared to optimize the synthesis conditions. The resulting MOFs, named Zr-BADS, were characterised using scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS), microscopy, and X-ray diffraction (XRD). By incorporating methanol into the preparation solvent, the surface area was increased to 396 m2/g. Additionally, the prepared MOFs exhibited amorphous shapes, with variations in size depending on the synthesis method. This research demonstrates the significance of the preparation method in controlling resulting particles’ properties. DOI: 10.5267/j.ccl.2023.9.001 Keywords: MOFs, Zr-Bads, Nanoparticles, Nanotechnology, Solvothermal Suplementary Material PDF (2300 K) | |
Open Access Article | |
5. |
Insight into a new discovery of SARS-CoV-2 inhibitor activated through Chloroquine derivatives
, Pages: 49-60 Mohammed Salah, Oumaima El Alaoui El Abdallaoui, Abdellah Zeroual, Nivedita Acharjee and Mohammed El idrissi PDF (2300 K) |
Abstract: The inhibiting effect of chloroquine compounds (ChCs) on the SARS-CoV-2 virus represents a highly debated form of study owing to the emerging proposals of mechanistic implications for exploring the mode of action of ChCs on the virus. Keeping in view the emerging significance of chloroquine derivatives, the present study was performed to screen one hundred and ninety known chloroquine derivatives for their interaction with several SARS-CoV-2 target proteins by molecular docking and molecular dynamics simulations to obtain an in-depth understanding of the potential hits of these compounds against SARS-CoV-2. A total of 190 molecules from the chloroquine family were screened for the identification of potential new inhibitors of the three therapeutic target proteins of SARS-CoV-2, namely Mpro (master protease), PLpro (papain-like protease) and SGp-RBD (spike glycoprotein receptor binding domain). The ChCs bound to SARS-COV-2 Mpro, PLpro, and SGp-RBD were generated by molecular docking and molecular dynamics simulations. Herein, a comparative analysis of chloroquine family products and a well-known drug against SARS-CoV-2, called Remdesivir, has also been presented. This investigation is intended to study the mechanism of interaction between ChCs and the SARS-CoV-2 virus and explore the unprecedented areas associated with the inhibitory activity of ChCs against this virus. DOI: 10.5267/j.ccl.2023.8.010 Keywords: SARS-CoV-2, Chloroquine, Main protease (Mpro), Papain-like protease (PLpro), Spike protein | |
Open Access Article | |
6. |
Effect of particles size on adsorption isotherm of chlorantraniliprole, dinotefuran, bispyribac-sodium, and metribuzin into sandy loam soil
, Pages: 61-72 Mohamed R. Fouad, Maher I. Aly, Ahmed F. El-Aswad and Mohamed E. I. Badawy PDF (2300 K) |
Abstract: The efficiency of different sorbents (bulk soil, sand, silt, clay and humic acid-HA) for chlorantraniliprole (CAP), dinotefuran (DNF), bispyribac-sodium (BPS), and metribuzin (MBZ) adsorption was described and compared. The adsorption of CAP, DNF, BPS and MBZ were significantly greater on clay and HA fractions than the bulk soils. Also, the tested pesticides sorption was greater on HA fraction compared to clay fraction except in the case of BPS. The mass unit of bulk soil adsorbed of CAP, DNF, BPS and MBZ approximately 15, 20, 10 and 5 % of the same of HA and 40, 60, 95 and 35 % of that of clay fraction, respectively. The actual amounts adsorbed on bulk soil ranged from (88.63 to 93.93 %) of the calculated amounts adsorbed on all soil components indicating high efficiency of the tested soils to adsorb tested pesticides. All adsorption data fitted well to the linear Freundlich equation. The adsorption of tested pesticides in soil and their different constituents is S-type according to 1/n (except some cases). DOI: 10.5267/j.ccl.2023.8.009 Keywords: Soil, Particle size, Freundlich equation, Chlorantraniliprole, Dinotefuran, Bispyribac-sodium, Metribuzin | |
Open Access Article | |
7. |
Efficient and reusable Pumice supported perchloric acid catalyst for concise and effective synthesis of 1,8-dioxo-octahydroxanthenes under solvent free condition
, Pages: 73-80 Adinath Tambe, Gopinath Shirole, Chaitali Dange, Jayshri Gavande, Rahul Narode, Bhagwat Uphade and Suprita Rana PDF (2300 K) |
Abstract: In the present investigation, a library of 1,8-dioxo-octahydroxanthene derivatives have been synthesised by the cyclo-condensation reaction of aryl aldehyde with two moles of dimedone under solvent free condition in the presence of Novel Pumice supported perchloric acid (Pumice@HClO4) as a less expensive, recyclable, thermodynamically stable and non-toxic catalyst. The significant advantages of this novel protocol are experimental simplicity, easy work-up procedure, good to excellent yields of product and more sustainable as the efficiency of the readily available catalytic material. DOI: 10.5267/j.ccl.2023.8.008 Keywords: Heterogeneous Catalyst, Pumice@HClO4, Dimedone, 1,8-Dioxo-octahydroxanthene, Solvent Free Reaction Suplementary Material PDF (2300 K) | |
Open Access Article | |
8. |
New biocidal hybrids bearing acridine and aminophosphonate Scaffolds against different bacterial pathogens
, Pages: 81-90 Heba Ramadan Gomaa, Abdel Aleem Hassan Abdel Aleem, Ayah Usama Salman and Ibrahim E.T. El-Sayed PDF (2300 K) |
Abstract: New hybrids containing acridine and α-amino phosphonate scaffolds 6a-h were synthesized by three one-pot reactions via Kabachnik–Fields reaction of 9-aminoacridine derivatives 3a-d, aldehydes 4a,b and triphenyl phosphite 5 in equimolar ratio under stirring at room temperature. The installation of the afforded hybrids was affirmed by different spectroscopic methods as IR, 1HNMR, 13CNMR, 31P NMR, MS and elemental analysis. The antibacterial activities of hybrids 6a-h were screened against both Gram-positive and Gram-negative bacteria of four pathogenic strains, comparable to ampicillin and chloramphenicol drugs. Most hybrids showed higher activity compared to the reference drugs. Notably, the antibacterial performance of 6c was more substantial than other analogues with best minimum inhibitory concentration (MIC) and highest zone of inhibition (ZOI) of 31, 34, 35, 38 mm, against Serratia marcescens, Streptococcus mutans, MRSA and Klebsiella pneumoniae clinical isolates respectively. In addition, Transmission Electron Microscopes (TEM) was carried out to study the mode of action of 6c with MRSA, the results confirmed that the titled hybrid caused the disruption of bacterial cell wall. Moreover, the time-dependent kill study revealed that the investigated compounds were time and dose-effective bactericidal agents and could be used as potential leads for further development and optimization of novel antibacterial agents. DOI: 10.5267/j.ccl.2023.8.007 Keywords: Acridine, Lewis Acid, α-Aminophosphonate, Antibacterial | |
Open Access Article | |
9. |
Optimization of pyridine based Schiff bases: Design, synthesis and determination of anti-inflammatory, antioxidant and antimicrobial activity
, Pages: 91-100 Vinod Kale and Gangadhar Bhopalkar PDF (2300 K) |
Abstract: The present paper proposed the tri-potassium phosphate catalyzed synthesis of some novel series of Schiff bases (3a to 3l) derived from 2-aminopyridine using microwave technique. All synthesized Schiff bases were confirmed by different spectroscopic methods. Further all synthesized imines have been evaluated to screen for antimicrobial, antioxidant and anti-inflammatory activity. The compound 3c displays potent anti-inflammatory activity with 42.307%±1.322 inhibition of inflammation. The antioxidant activity data revealed that all synthesized Schiff bases exhibit potency to scavenge DPPH and nitric oxide radicals. Antimicrobial properties of these compounds showed moderate to excellent growth of inhibitory activity against various tested pathogens. Our observations and examination for pharmacological study towards the presence of active pharmacological functional groups present in the main structural nucleus of synthesized imines. Therefore, present study may lead to the development of a new class of anti-inflammatory and antioxidant drugs with structural modification. DOI: 10.5267/j.ccl.2023.8.006 Keywords: Tri-potassium phosphate, Schiff bases, Microwave synthesis, Anti-inflammatory activity, Pharmacological study Suplementary Material PDF (2300 K) | |
Open Access Article | |
10. |
Design and synthesis of potential pyrrole-coupled carboxamide derivatives as an anti-superbug MRSA agent
, Pages: 101-116 Boobal Arasu Velu, Ganesamoorthy Thirunarayanan and Sivakumar Kulanthaivel PDF (2300 K) |
Abstract: A series of new pyrrole-coupled carboxamide derivatives had been synthesized and amply characterized by various techniques, viz FTIR, 1H-NMR, 13C-NMR, and LCMS. All these compounds had undergone evaluation for their PASS, BBB, pharmacophore model, ADME, and bioactive score. The antibacterial properties of all the derivatives were examined and compound 5i demonstrated strong antibacterial activity against MRSA. A membrane damage investigation supported by SEM pictures, cellular content leakage, potassium efflux, and bacterial respiration suppression showed that compound 5i had anti-MRSA properties. A good binding score of -9.11 was found for compound 5i against the MRSA protein 6FTB in an in silico molecular docking analysis, compared to a score of -10.25 for streptomycin. Based on these findings, compound 5i can be further studied in order to develop it as a drug to treat MRSA infections. DOI: 10.5267/j.ccl.2023.8.005 Keywords: Pyrrole coupled carboxamide derivatives, Molecular docking, Biocompatibility and Toxicity Suplementary Material PDF (2300 K) | |
Open Access Article | |
11. |
Advancements in polyurethane coating: Synthesis and characterization of a novel hyper branched polyester polyol
, Pages: 117-126 Mohammad Abdollahi and Behzad Khalili PDF (2300 K) |
Abstract: Hyperbranched polyester polyols have emerged as a promising candidate for polyurethane coatings due to their unique structure and properties. In this context, this paper aims to synthesize a new hyperbranched polyester polyol and evaluate its potential as a polyol for polyurethane coating applications. In this study, the synthesis of hyperbranched polyester polyol involves the reaction between a multifunctional alcohol and a multifunctional carboxylic acid or anhydride. It is further modified by incorporating 2-hydroxyethyl methacrylate and styrene. The properties of the polyester polyol were characterized using various analytical techniques, including FTIR, NMR, SEM and TGA. This paper also provides a discussion on the potential applications of the synthesized hyperbranched polyester polyol in several industries such as automotive, aerospace and construction. DOI: 10.5267/j.ccl.2023.8.004 Keywords: Coating, Polyester polyol, Polyurethane, Dehydrated castor oil fatty acid, Poly 2-hydroxyethyl methacrylate-co-styrene | |
Open Access Article | |
12. |
Multicomponent approach to the synthesis and spectral characterization of some 3,5-pyrazolididione derivatives and evaluation as anti-inflammatory agents
, Pages: 127-140 Yasser A. El-Ossaily, Nuha M. M. Alanazi, Ibrahim O. Althobaiti, Hamud A. Altaleb, Nayef S. Al-Muailkel, Mohamed Y. El-Sayed, Modather F. Hussein, I. M. Ahmed, Maha M. Alanazi, Ahmed Fawzy, Shaban A. A. Abdel-Raheem and Mahmoud S. Tolba PDF (2300 K) |
Abstract: Pyrazolones are a class of heterocyclic compounds that contain a pyrazole ring fused to a ketone group. Recent scientific research has focused extensively on the potential anti-inflammatory properties of pyrazolone compounds due to their diverse pharmacological effects in alleviating inflammation and reducing fever. This motivated us to focus on the preparation of these derivatives in a simple and eco-friendly manner. A convenient new green methodology was modified for the preparation of 1-phenyl-3,5-pyrazolidinedione by the sonicated MCR of diethyl malonate, phenylhydrazine, and a catalytic amount imidazole as homogenous organic catalyst in water green solvent in a good yield. On the other hand, some of 4-arylidinepyrazolidinedione derivatives are prepared in the same manner via the treatment of a mixture of diethyl malonate, phenylhydrazine, aromatic aldehydes, and a catalytic amount of imidazole in an aqueous medium. Our target synthesized pyrazolidinediones were elucidated via elemental and several spectral analyses. Due to the importance of pyrazolidinediones in the field of treating inflammation and relieving pain, a number of prepared compounds were chosen to test their efficacy as anti-inflammatory agents using carrageenan-induced foot edema in rats and compare the results with indomethacin, the standard drug. We found that the majority of derivatives yield promising results spanning from good to wonderful, so derivatives (15k, 15b, 15h, 15a, and 15j) yield the best results while derivative (15i) yields an average result. As for the derivative (15f), it yields the lowest results compared to the standard drug. This is due to the difference in the structural composition of these derivatives, which increases the likelihood of their use as anti-inflammatory derivatives. DOI: 10.5267/j.ccl.2023.8.003 Keywords: Multicomponent, Synthesis, Reactions, Pyrazolidinediones, Anti-inflammatory activities Suplementary Material PDF (2300 K) | |
Open Access Article | |
13. |
Effect of pH variation and temperature on pesticides sorption characteristics in calcareous soil
, Pages:141-150 Mohamed R. Fouad, Ahmed F. El-Aswad, Mohamed E. I. Badawy and Maher I. Aly PDF (2300 K) |
Abstract: The effect of pH value at three levels (5, 7, and 9) and temperature at two levels (25 and 50ºC) on the sorption properties of chlorantraniliprole-CAP, dinotefuran-DNF, bispyribac-sodium-BPS, and metribuzin-MBZ were studied in calcareous soil. The sorption of CAP at pH 5 (38.2%) was significantly higher than that at pH 7 (32.4%) and 9 (28.4%), whereas the sorption of DNF at pH 5 was lower than that at pH 7. The adsorption of BPS at pH 9 was statistically significantly higher than that at pH 5 and pH 7. Regarding the herbicide MBZ adsorption percentages were 47.0, 61.1 and 57.1 % at pH 5, 7 and 9. The number of tested pesticides adsorbed by the soil was significantly influenced by the temperature. The adsorbed amount of CAP was decreased from 37% to 33% as the temperature was increased from 25˚C to 50 ˚C, while no significant differences of adsorbed DNF. Data showed that the adsorption of BPS and MBZ statistically decreases with temperature. The data from the adsorption behaviour of CAP, DNF, BPS, and MBZ in tested soil at different temperatures correspond well with the Freundlich isotherm. The negative ΔG˚ indicated that the adsorption of CAP, DNF, BPS, and MBZ were spontaneous at different temperatures. There was an increase in the entropy of the pesticide-soil systems as shown by the positive values of ΔS˚. DOI: 10.5267/j.ccl.2023.8.002 Keywords: Pesticides, Soil, Freundlich equation, pH value, Temperature | |
Open Access Article | |
14. |
Current trends of chemoinformatics and computer chemistry in drug design: A review
, Pages: 151-162 Iryna Myrko, Taras Chaban, Yuriy Demchuk, Yana Drapak, Ihor Chaban, Iryna Drapak, Mariana Pankiv and Vasyl Matiychuk PDF (2300 K) |
Abstract: A crucial direction in the progress of modern medical chemistry is the development and improvement of theoretical investigation methods of drugs mechanisms of action, predicting their activity, and virtual design of new drugs. This review describes the history of targeted search for biologically active compounds, current in silico approaches and tools used in the rational design of potential drugs, in particular the main computational strategies used in modern drug design are presented and outlines the main methodologies for implementing these strategies. DOI: 10.5267/j.ccl.2023.8.001 Keywords: Drug design, In silico, Lead-compound, Virtual screening, Pharmacophores, Molecular docking, QSAR | |
Open Access Article | |
15. |
Convenient and versatile method of 8-amino-6-(2-R-thiazol-4-yl)-1,7-naphthyridines synthesis
, Pages: 163-172 Artem Konovalenko, Oleh Shablykin, Olga Shablykina, Andrii Kozytskyi and Volodymyr Brovarets PDF (2300 K) |
Abstract: On the base of 3-formylpicolinic acid by two successive heterocyclizations (the formation of a pyrone fragment by the cyclization of chloroacetone with the carboxyl and formyl groups; and the construction of the thiazole cycle through the bromination of the acetyl fragment and following interaction with thioamides), 6-(2-(phenyl/thiophen-2-yl)thiazole-4-yl)-8H-pyrano[3,4-b]pyridin-8-ones were obtained; and then the pyrone fragment was converted to pyridone by the action of ammonia under high pressure. When such 6-(2-R-thiazol-4-yl)-1,7-naphthyridin-8(7H)-ones reacted with triflic anhydride, O-sulfonylation of the pyridone fragment occurred, after that triflate group was easily substituted by secondary cyclic aliphatic amines. Thus, a number of new 8-amino-6-(2-R-thiazol-4-yl)-1,7-naphthyridines – previously inaccessible heterocyclic derivatives with promising biological activity – were obtained. DOI: 10.5267/j.ccl.2023.7.004 Keywords: 6-Hetaryl-8H-pyrano[3,4-b]pyridin-8-one, (3-Hetaryl-8-azaisocoumarin), 8-Oxy(amino)-6-hetaryl-1,7-naphthyridine, Recyclization, Functionalization | |
Open Access Article | |
16. |
Design and synthesis of novel N, N′-substituted benzamide derivatives as potential insecticidal agents against the white mango scale insect, Aulacaspis tubercularis (Hemiptera: Diaspididae)
, Pages: 173-186 Moustafa M.S. Bakry,Liqaa H. Mohammed, Noha A. Dabour and Mohamed A. Gad PDF (2300 K) |
Abstract: The white mango scale insect Aulacaspis tubercularis (Newstead) (Hemiptera: Diaspididae), which causes defoliation, drying out of young twigs, dieback, poor flowering, and decreased fruit output, causes serious damage to mango trees in Egypt. Attacks on mango fruits result in pink imperfections that lower their value as a commercial and export item. The current report aims to support the development of integrated management plans to combat A. tuberculosis and to identify more effective, eco-friendly insecticides. The bug may cause a considerable decrease in mango production and jeopardize the sustainability of mango plantation production if no management measures are taken. Currently, the application of a small number of insecticides—the majority of which have poor performance and are disruptive is the primary method used to manage A. tubercularis. In order to suppress this insect, we created novel pesticides called insect growth regulators (N, N′-substituted benzamide derivatives). By using both traditional and elemental spectroscopic investigations (IR, 1HNMR, and 13CNMR), these synthesized compounds which are linked to the most well-known insect growth regulator insecticides had their structures validated. The findings showed that A. tubercularis nymphs were more responsive to the evaluated treatments than adult females. After one day of application, all tested treatments resulted in a sizable proportion of mortality; the percentage of mortality increased with time for both A. tubercularis nymphs and adult females. Furthermore, the treatment with compound 3b was more effective than other synthesized compounds, with a LC50 of 0.318 ppm against nymphs and a LC50 of 0.993 ppm against adult females of A. tubercularis. While the treatment with compound 5 was the least toxic for controlling this pest, many assessments are essential to studying the efficacy of these treatments on advantageous insects. DOI: 10.5267/j.ccl.2023.7.003 Keywords: Insecticidal activity, Synthesis, Aulacaspis tubercularis, Insecticide, Pyriproxyfen | |
Open Access Article | |
17. |
Predictive study, using density functional theory and time dependent functional theory, on the structure-property quantification of methylene blue and methyl red dyes for the application in organic solar cells
, Pages: 187-198 Latifa Amini, El Hassan El Karni, Mustapha Oubenali,Hayat El Ouafy, Mohamed Mbarki and Brahim El Ouadi PDF (2300 K) |
Abstract: In this work, two organic materials as dyes, namely, methylene blue (MB) and methyl red (MR), have been proposed to play the role of the electron donor in organic photovoltaic (OPV) cells. We use the PCBM as a well-known electron acceptor. The density functional theory (DFT) method has been used to determine the electrostatic potential and the frontier molecular orbitals (FMO), of the methylene blue (MB) and the methyl red (MR) compounds. Nonlinear optical (NLO) descriptors have been determined for the two compounds. The potential energy surface analysis has been performed by the DFT method using the exchange and correlation of Becke, Lee, Yang, and Parr Gradient Corrected Functional (B3LYP) with the standard 6-31G(d) base. We have performed another theoretical study using quantum time-dependent density functional theory (TD-DFT) on both MB and MR as organic dyes to determine their UV-Vis spectra. The results of the energy gap, chemical hardness, dipole moment, and hyperpolarizability show that MB may be chemically more reactive Than MR. The present work has proposed a bilayer organic photovoltaic (OPV) cell to contribute to the valorization of the two dyes as solar materials. The developed photovoltaic cell project has used electrical and energetic parameters that can describe the OPV cell based on ([MB or MR]: PCBM). Open-circuit voltage (Voc), excitation energy, and oscillator strength have been theoretically determined. The results of the present work showed a remarkably high open circuit voltage, especially in the case of methyl red (1.55 V) more than in the case of the methylene blue (0.84 V) so that both of the two dyes can be a good candidate for organic solar cells. DOI: 10.5267/j.ccl.2023.7.002 Keywords: Methylene Blue, Methyl Red, UV-Visible spectrum, DFT, OPV | |
Open Access Article | |
18. |
In silico investigations on the repurposing of antivirals for Covid-19 and pharmacophore modelling
, Pages: 199-206 Vinod P Raphael, K.S. Shaju, T.K. Bindu and A. Sini PDF (2300 K) |
Abstract: The pandemic COVID-19 has been spreading around the globe from December 2019 onwards and is considered the most infectious disease of this century. To date, there is no effective drug against SARS-CoV-2 discovered by pharmaceutical scientists, and the research is going rigorously all over the world. In this work, we examined the interaction of the already existing antivirals (Lopinavir, Atazanavir, and Remdesivir) with the structural proteins of SARS-CoV-2 using computational methods. Pharmacophore modeling of these drugs was conducted using molecular databases to determine the lead compounds from molecular databases. Pharmagist Webserver and Zinc Molecular Database were used to find out the pharmacophore and lead compounds, respectively. The drug-likeness properties of the compounds were evaluated by the SwissADME webserver. In silico studies showed that the binding affinities of the drugs followed the order Remdesivir > Atazanavir > Lopinavir. Docking and pharmacological studies revealed the potency and drug-likeness of the synthetic molecules. DOI: 10.5267/j.ccl.2023.7.001 Keywords: Remdesivir, Docking, Pharmacophore, Binding Energy, ADME | |
Open Access Article | |
19. |
Advancements in conjugated polymer research: applications in organic photovoltaics and field effect transistors
, Pages: 207-224 Ali Jabbar Al-Sarray PDF (2300 K) |
Abstract: This review provides a comprehensive overview of the development and applications of conjugated polymer semiconductors. The review summarizes the current state of research in this field, including the synthesis and characterization of these materials, their properties, and potential applications. The scope covers a wide range of topics, including organic photovoltaics, organic field-effect transistors, and conjugated polymer nanoparticles. The main findings highlight the significant progress that has been made in this field, with conjugated polymers exhibiting favorable electronic and optical properties, as well as high charge mobility. These materials have shown great potential for use in various applications, including solar cells, light-emitting diodes, and field-effect transistors. The applications are far-reaching, with the potential to revolutionize the electronics industry by providing low-cost, flexible, and environmentally friendly alternatives to traditional inorganic materials. One of the key challenges facing this field is the need to improve the efficiency and stability of conjugated polymer-based devices. While significant progress has been made in this area, there is still much work to be done to develop materials and device architectures that can achieve high performance over extended periods of time. Another challenge is the need to develop scalable manufacturing processes that can produce large quantities of high-quality conjugated polymers at a reasonable cost. The continued advancement of this field holds great promise for the development of new technologies that can improve our lives and help to address some of the world’s most pressing challenges. DOI: 10.5267/j.ccl.2023.6.007 Keywords: Organic photovoltaics, Conjugated polymer, Field-effect transistors, Polymer nanoparticles, Solar cells | |
Open Access Article | |
20. |
Development of 2-dimensional and 3-dimensional QSAR models of Indazole derivatives as TTK inhibitors having Anticancer potential
, Pages: 225-240 Mithlesh Yadav, Balasubramanian Narasimhan and Archana Kapoor PDF (2300 K) |
Abstract: The study aimed to explore the anticancer efficacy of indazole pharmacophore by analyzing a series of 109 derivatives of indazole as Tyrosine Threonine Kinase (TTK) inhibitors through quantitative activity relationship analysis using 2D and 3D QSAR techniques. The best 2D-QSAR model was generated by the MLR method, showing a high correlation coefficient (r2) of 0.9512, and good internal (q2), and external (pred_r2) cross-validation regression coefficients of 0.8998, and 0.8661, respectively. The residual values were modest, indicating good agreement between the observed and predicted pIC50 values, which suggested that the chosen model was predictably accurate. The 3D QSAR model, built using the SWF kNN approach, displayed a high internal cross-validation regression coefficient (q2) of 0.9132. Essential structural features/considerations in developing indazole as prospective anticancer medicines have been suggested. The study provides a reliable and predictive model for the prediction of anticancer activity of indazole derivatives. The identified essential structural features/considerations may be useful for the development of prospective anticancer medicines. DOI: 10.5267/j.ccl.2023.6.006 Keywords: Indazole, Anticancer, 2D QSAR, 3D QSAR, TRK Inhibitor | |
Open Access Article | |
21. |
An overview on 2-indolinone derivatives as anticancer agents
, Pages: 241-254 Samy M. Ibrahim, Ahmed S. Abdelkhalek, Shaban A. A. Abdel-Raheem, Nada E. Freah, Nada H. El Hady, Nada K. Aidia, Nada A. Tawfeq, Nora I. Gomaa, Nora M. Fouad, Hager A. Salem, Hager M. Ibrahim and Mahmoud M. Sebaiy PDF (2300 K) |
Abstract: 2-Indolinone nucleus is considered one of a promising heterocyclic core in medicinal chemistry that showed numerous range of activity among which antimicrobial, antioxidant, antiviral, antitubercular and anticancer activities. Cancer targeting is still an issue so there is a need for developing new agents that inhibit cancer growth without or low effect on normal body cells. Some derivatives of indolin-2-one are known to be a critical structure in some inhibitors of receptor tyrosine kinases (RTKs); a cancer target therapy, for example, Sunitinib. Herein in this review we focus on 2-indolinone derivatives as RTKs inhibitors as cancer targeting therapy. DOI: 10.5267/j.ccl.2023.6.005 Keywords: 2-Indolinone, Anticancer drugs, Sunitinib, Semaxinib, Nintedanib | |
Open Access Article | |
22. |
Pressurized liquid extraction and gas chromatography/mass spectrometry for determination of nitrated polycyclic aromatic hydrocarbons adsorbed on refractory diesel particles
, Pages: 255-264 Khalil Oukebdane PDF (2300 K) |
Abstract: A pressurized liquid extraction (PLE) technique was evaluated in this study and optimized using response surface methodology (RSM) for the determination of polycyclic aromatic hydrocarbons and their nitro derivatives from diesel particulate matter. A central composite design (CCD) was applied for the study of three parameters (temperature, nature of solvent and static time) and the optimal conditions were determined for a time of 9 min and a temperature of 145 °C and dichloromethane as extraction solvent. With the GC/MS analytical technique, the limits of detection (LOD) obtained range from 0.3 to 1.5 µg.L-1 for PAHs and from 4.6 to 8 µg.L-1 for nitrated PAHs. Also, this method allowed excellent recoveries of NPAH adsorbed on diesel soot particles (R ≥ 90%) using a mixture of solvents (1% acetic acid in pyridine). The PLE process developed in this research is quantitative and reproducible while using much less solvent than conventional extraction methods. DOI: 10.5267/j.ccl.2023.6.004 Keywords: Diesel, Pollution, PAHs, Pressurized liquid extraction, Soot | |
Open Access Article | |
23. |
Photocatalytic degradation of Orange-II by surfactant assisted Mn/Mg co-doped TiO2 nanoparticles under visible light irradiation
, Pages: 265-276 Sankara Rao Miditana, Siva Rao Tirukkovalluri, Imandi Manga Raju and Shaik Abdul Alim PDF (2300 K) |
Abstract: In this research, the photocatalytic effect was studied for sol-gel synthesized Mn/Mg co-doped metal oxide (TiO2) nanoparticles (NPs), which are encapsulated with anionic Gemini surfactant. The physicochemical properties of Mn/Mg co-doped TiO2 were investigated using a variety of characterization techniques, FT-IR, UV Vis-DRS, XRD, SEM, EDX, TEM, BET and PL. Characterization results reveal that Mn/Mg dopants stabilize TiO2 in the form of anatase phase and reduce the bandgap energy. Presence of strong chemical bonding and functional groups at the interface of dopant and TiO2 NPs was confirmed with FT-IR. The photocatalytic activity of these catalysts was assessed by the degradation of Orange II (AO7) using visible light irradiation. Of the variable nanomaterials MMT5-GS2 showed remarkable results. The photoluminescence studies revealed that OH radicals are the reactive species and responsible for oxidative photocatalytic degradation of Orange II. DOI: 10.5267/j.ccl.2023.6.003 Keywords: Mn/Mg nanoparticles, Anionic Surfactant, AO7-Degradation, Visible light, Photoluminescence |
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